1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagccttccaaaaaaataaactattaaattttgtctgcttaacgctattaaattcacaatgatttggtttggagcctacatgttgccactattactgcagGCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATTGCTAGTCTG
species | Glycine max |
transcript | GLYMA15G05290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATACCTTGAGAGCTCAAAATATAGAAACTTGGCCGTTCTACAACCAG GCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTTEST: gi|18732348|gb|BM526986.1|BM526986
genomic: TGGATACCTTGAGAGCTCAAAATATAGAAACTTGGCCGTTCTACAACCAGgtactacagt ... attactgcagGCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTT
EST: TGGATACCTTGAGAGCTCAAAATATAGAAACTTGGCCGTTCTACAACCAG GCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTTEST: gi|31468189|gb|CD410217.1|CD410217
genomic: TGGATACCTTGAGAGCTCAAAATATAGAAACTTGGCCGTTCTACAACCAGgtactacagt ... attactgcagGCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTT
EST: TGGATACCTTGAGAGCTCAAAATATAGAAACTTGGCCGTTCTACAACCAG GCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTT
genomic: TGGATACCTTGAGAGCTCAAAATATAGAAACTTGGCCGTTCTACAACCAGgtactacagt ... attactgcagGCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTT
tattaaattcacaatgatttggtttggagcctacatgttgccactattactgcagGCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATTGCTAGTCTG
aatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagccttccaaaaaaataaactattaaattttgtctgcttaacgctattaaattcacaatgatttggtttggagcctacatgttgccactattactgcagGCCACTGCCAATTTAGTGCCTCTTAACTCAAAAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATTGCTAGTCTG
- -ccttcca
- - - - - aaaaaat
- - - - - - - - - - - - - - - -tgtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - -attcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccact