Sequence
atgc intronic sequence ATGC exonic sequence...atcagccagcttcgattgattaaagttttgtacctattaaaaaataataacaaagaaggatgtcacacattgttatatacatatgcttcttttcttgtagGTTCTGCTCAGTATGCTTCCTAAATATTACCGTCATGTAGGAGATCATGAAAATACTCTTATAACAAAATTCTTCGGGCTCCATCGGATAACATTAAGAG
Basic information
| species | Glycine max |
| transcript | GLYMA15G05150.2 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05150.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0034g01790.t01 (Vitis vinifera), 3'ss of exon 6
atcagccagcttcgattgat-taaagttttgtacctattaaaaaataataacaaagaaggatgtcacacattgttatatacatatgcttcttttcttgtagGTTCTGCTCAGTATGCTTCCTAAATATTACCGTCATGTAGGAGATCATGAAAATACTCTTATAACAAAATTCTTCGGGCTCCATCGGATAACATTAAGAG
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-ttagataagaaaaatgagtgcagaaaaaaaaattccacttagcttggtcctagtgatggttatggaaggatgttgaccgtgaatgatttttgctttatagGTTCTACTTAAGATGCTGCCTAACTATTACAATCATGTAGCAGCACATGAAAATACTCTTATAACAAAATTTTTTGGGCTTCATCGGATTACATTGAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193633630|gb|FK584714.1|FK584714EST: TAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAG GTTCTGCTCAGTATGCTTCCTAAATATTACCGTCATGTAGGAGATCATGAA
genomic: TAGATTTGTGATAAAGACTGTGAATAAATCTGAACTAAAGgtttgtagtc ... tttcttgtagGTTCTGCTCAGTATGCTTCCTAAATATTACCGTCATGTAGGAGATCATGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataacaaagaaggatgtcacacattgttatatacatatgcttcttttcttgtagGTTCTGCTCAGTATGCTTCCTAAATATTACCGTCATGTAGGAGATCATGAAAATACTCTTATAACAAAATTCTTCGGGCTCCATCGGATAACATTAAGAG
taataac putative branch site (score: 1)
tatgcttcttttctt putative PPT
attgttatatacatat TA-rich tract
