1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatactttatccttttagcaagacccttgtacaaatcgtttcccttttccccctttttttcagcctcattttagtttccaaaactgattattcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTA
species | Glycine max |
transcript | GLYMA15G05100.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC ATGACCGTCACTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTEST: gi|18734259|gb|BM528080.1|BM528080
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTEST: gi|26045603|gb|CA783140.1|CA783140
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTEST: gi|298193280|gb|HO033714.1|HO033714
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTEST: gi|9898820|gb|BE607788.1|BE607788
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTEST: gi|298199382|gb|HO042745.1|HO042745
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCC ATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: ACTATCATCTCAAGCCAGACGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcaa ... ttcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
tttccccctttttttcagcctcattttagtttccaaaactgattattcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTA
aactgat putative branch site (score: 3)
attttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatactttatccttttagcaagacccttgtacaaatcgtttcccttttccccctttttttcagcctcattttagtttccaaaactgattattcgctgcagATGACCGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA