Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctttctatttttcatttttttctcagatatgattattgtcttaggggtagcattcaagttacatgttgtcacgttatcaacaataacactcagcattttgccagcttgcttgaggattttcacccttaaatctgacaatatactttttgttggctttcttttatgccagATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAACAGTGACAAACTTCAGCAATCATATAATGAACTCCAGGAATTCAAGATTGTAT

Basic information

species Glycine max
transcript GLYMA15G04970.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04970.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 3
gtctctttctatttttcatttttttctcag--atatgattattgtcttaggggtagcattca---agttacatgttgtcacgttatcaacaataacactcagcattttgccagcttgcttgaggattttcaccct---------taaatctgacaatatactttttgttggc-tttcttttatgccagATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAACAGTGACAAACTTCAGCAATCATATAATGAACTCCAGGAATTCAAGATTGTAT
||   ||| ||| ||  |  | ||| | |   | |  |  ||| | |||    ||  ||||    | ||  || ||||    | |  || ||   |    |   |||||  |    |    ||     | ||             || | ||   | |  ||| |  |  || ||||| ||||   ||||||||||| |||| ||||||||||||||  | |||||||||||||| ||||| ||||| | |||| |||||||||| |||| ||| |||||||| ||||
gttcgtttttatattatagctctttgttattcacaaaagaattttattattattattattcggtgacttcaattttgtggtttaaaaaaaaaaggctgctactcttttgggaaaaagggaaagagaaattacttgatggaaggacaactttgctcagaatcttatgatgtgcatttctcttattttagATACAACTTTCTGAGCATGAACATGAGCTACTGGAAATGAACTCTAATAGTGAGAAACTACGGCAAACATATAATGAGCTCCTGGAGTTCAAGATGGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208113455|gb|GD911150.1|GD911150
EST:     CTTCTTCTCGTACTGTATTGCAACCAGATATAGACTTGGAGGATTTAGAG                         ATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTGACAGT
genomic: CTTCTTCTCGTACTGTATTGCAACCAGATATAGACTTGGAGGATTTAGAGgtctctttct ... tttatgccagATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAACAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttcacccttaaatctgacaatatactttttgttggctttcttttatgccagATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAACAGTGACAAACTTCAGCAATCATATAATGAACTCCAGGAATTCAAGATTGTAT
               atctgac  putative branch site (score: 3)
                                       ctttcttttatgcc  putative PPT
                      aatatactttttgtt  TA-rich tract