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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA

Basic information

species Glycine max
transcript GLYMA15G03870.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g31550.1 (Oryza sativa), 3'ss of exon 3
gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgt-gtttatctccgggccttggctatgagctttcttcttattttaa-atttatatttacccatcaatactgtgaatttacc-cttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
                                                                                                 ||||  |   | || |   | ||  | |   ||||| || | |  ||  | |   |||| | | | |  |   ||     |     ||   ||  | ||||||    | ||   ||| || |||||||||||||||||||| || ||||||||||| ||||| |||||||||||  |  | |||||| ||   || ||||
-------------------------------------------------------------------------------------------------atgtcatcagtttctgaatcctgtattttcactttcatcctttcctaccaataggatttgctcttgatcatgatgttcagatggtctgctttccttacagGAACGTTTAGCCATGGCCCACGGTTCACAATGTGGATTTTGCACCCCTGGTTTTGTGATGTCGATGTATGCATTGCTGAGATCAAGTGAACAGCCTCCTA

upper sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G888877_T01 (Zea mays), 3'ss of exon 2
gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
                                                                                    |    |    |||||     | | | |  || ||  |     | |   ||| ||  |    |  |  ||   |  | |  |   ||       |  ||    |  | |||||||   | ||   ||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||| |  |  | || ||  ||   || || |
----------------------------------------------------------------------------------attgtttactaagtaataaagctgttttcatgcatt--caggtcgttcctttcctacct---gtgcaccttcctcttttatcataatg-------ctctgcctcccttgcagGAATGTTTAGCCAAGGCACATGGTTCACAATGTGGATTTTGCACCCCTGGTTTTGTGATGTCTATGTATGCACTGCTGAGATCTAGCAAACAGCCTCCCA

upper sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G34900.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaattta--cccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
                                                                                                                           || | ||| | ||| ||  | |||| | ||| | |||   | ||| ||   ||   |    || |    |||||| ||  ||||     | |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||| || ||  |||||||| |||   | ||| 
--------------------------------------------------------------------------------------------------------------------------gtggggttt-tacttcttccagattttttttttctcat---ttctgcgatcctaattctccctatttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGTTTTGTCATGTCGATGTATGCCTTGTTGAGGTCAAGTAAAAACTCACCTT

upper sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G34890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
                                                                                            ||   || |  || |||| ||  ||           ||||||||||||||      | |||      ||| |  | |||  ||         ||    |||||| ||  ||||     | |||||||| |||||||| ||||||||||| || ||| | |||||||||||| | || ||  |||||||| |||   | ||| 
--------------------------------------------------------------------------------------------gtaagatttacttctctcaggttcta----------tttcttcttatttt--gcggagattcttttgtcactgttatgatctt--------gattctctcagGAGTCTTTGGCATCTTCCCATGGTTCCCAATGTGGGTTTTGTACTCCCGGGTTTATCATGTCCATGTATTCGTTGTTGAGGTCAAGTAAAAACTCACCTT

upper sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 3
gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaat-ctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
                                                                                 |   | | ||| | | || |   ||    |   |||   ||||        ||||  |  |||| || |          |||   | |||| |    ||  ||||  ||| ||||||||  |||| |   ||||||| |||||||| ||||||||||||||||||||  |||||||||||||||| |||||| |||||||||| ||||| || |
-------------------------------------------------------------------------------ggtctctactatgattttattttcctaaagtcatccct--actattgaaagctttctggtactaaaattct----------caactgtctgaaat----ctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591492|gb|DB955756.1|DB955756
EST:     TTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAG                         GAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGT
genomic: TTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgacagatg ... atctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
                                              tctcttc  CT-rich tract
     atttatattta  TA-rich tract