Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctgcgcacttcagctatcataaagaagtcatctaactgcaatgtttttctttcgtatcatcttctctcgtgttagttctgaccaaatgttccatcttctcattcatgtagTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAG

Basic information

species Glycine max
transcript GLYMA15G03820.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03820.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 3'ss of exon 3
gtaggctgcgcacttcagctatcataaagaagtcatctaactgcaatgtttttctttcgtatcatcttctctcgtgttagttctgaccaaatgttccatcttctcattcatgtagTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAG
       | |  |||      |  | |        | ||||| |||     |  ||| || | |  |     | | ||  || |||    |  | ||   |  |    |||| |||| ||||| || ||  | |||||||||||||| |   ||||||||||||||||||||||| |||||| ||| ||||||||    |  |||
-------gtgagctttcttctttgtcag-----tgtttaacttcaaatccatcattttgt-taacataactccattttgattttgaaatcaattgcctattcattgaccatgcagTTCTTTGCGGGTGTCGTTTTCTTTGCTGTTGTGGTTGGTTTTATCCCAGAGCCAACACTTGCTCCCAGTTCAGATGTGAAAAATAAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193499614|gb|FK460401.1|FK460401
EST:     TGGCCCACAATGCTTTGAACTCACTGGGCTTCTTGAAAGGAAACCTTTGG                         TTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCCCACAATGCTTTGAACTCACTGGGCTTCTTGAAAGGAAACCTTTGGgtaggctgcg ... attcatgtagTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|213593225|gb|DB973530.1|DB973530
EST:     TGGCCCACAATGCTTTGAACTCACTGGGCTTCTTGAAAGGAAACCTTTGG                         TTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCCCACAATGCTTTGAACTCACTGGGCTTCTTGAAAGGAAACCTTTGGgtaggctgcg ... attcatgtagTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatcttctctcgtgttagttctgaccaaatgttccatcttctcattcatgtagTTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAG
                    ttctgac  putative branch site (score: 2)
                                 ttccatcttctcattc  putative PPT
                            aaatgtt  TA-rich tract