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...agatcactatcttaatagactcccgatcctgtttccataattgattttataggtcatagagcatttgacttcgtttgattcttatatcatcttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCTTTCAAAGATTTTAAT
species | Glycine max |
transcript | GLYMA15G03190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG GAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAEST: gi|192323551|gb|FK019022.1|FK019022
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttg ... cttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGA
EST: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG GAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGACEST: gi|11413014|gb|BF425034.1|BF425034
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttg ... cttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGAC
EST: ATCCATATACTCTGGAATATTTCATGCAACANACACAGACAAAGATTNTG GAATCATTNTGANAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttttg ... cttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGAC
tttataggtcatagagcatttgacttcgtttgattcttatatcatcttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCTTTCAAAGATTTTAAT
tcatctt CT-rich tract
attcttatatcatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatcactatcttaatagactcccgatcctgtttccataattgattttataggtcatagagcatttgacttcgtttgattcttatatcatcttattatagGAATCATTTTGAAAATGGCTTGCTTAACAAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCTTTCAAAGATTTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG