1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgatgaggagcttcagattttagaagaagaaaacaaatgttatataaagttaactctaccacaagacaatgtgtgatttttttattcttgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGC
species | Glycine max |
transcript | GLYMA15G03020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAEST: gi|213606311|gb|DB961371.1|DB961371
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCA
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAEST: gi|298182355|gb|HO026530.1|HO026530
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCA
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGGGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAEST: gi|151400940|gb|EV270754.1|EV270754
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCA
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAEST: gi|9203322|gb|BE329546.1|BE329546
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCA
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAEST: gi|192325012|gb|FK015433.1|FK015433
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCA
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAEST: gi|151393771|gb|EV263646.1|EV263646
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCA
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAEST: gi|42722562|gb|CK768461.1|CK768461
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCA
EST: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATG GTTTTGAGAGGCCTTCTGCAATACAGCAAAAGGGGAATTGTTCCTTT
genomic: TGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGgtatgacaag ... tgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAA-GGGGAATTGTTCCTTT
ataaagttaactctaccacaagacaatgtgtgatttttttattcttgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGC
agttaac putative branch site (score: 3)
tttttttattcttgtt putative PPT
atttttttattcttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgatgaggagcttcagattttagaagaagaaaacaaatgttatataaagttaactctaccacaagacaatgtgtgatttttttattcttgttctatagGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGC
- tgatgag
- - - - - -gcttcag
- - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga