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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagtattactatagagcctaggctttatcccgcaactataaaattttaaaggatttttatattacgcatttacactgattccttcttttcaataatctccacctagttatgtgatatgcgtgtattgatcctattcctgattgacctttagATTGTATATCGGTGACTTGCTCTGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTGTGGCCACTTCAAGTTAAACTTCGCATCAACAT

Basic information

species Glycine max
transcript GLYMA15G02800.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02800.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g02220.t01 (Vitis vinifera), 3'ss of exon 5
gtattagtattactatagagcctaggctttatcccgcaactataaaattttaaaggatttttatattacgcatttacactgattccttcttttcaataatctccacctagttatg--tgatatgcgtgtattgatcctattcctgattgacctttagATTGTATATCGGTGACTTGCTCTGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTGTGGCCACTTCAAGTTAAACTTCGCATCAACAT
                                   | |   ||| | ||     |  | | || |||   |       ||  ||  |||  ||   || |||  ||  | || |   |   || |    |||||  ||  | ||  |    || ||||||||  |||  |||||||| | || || || |||||||| |||||||||||||| || ||||||||||||||| ||||||||||| | ||| | |   |
-----------------------------------gtatacatacactt-----gtgtctctaaattgaac-----tgctattttattcgatttggta-tcttgactaaattcttattatcatccaaaaattgacacttctgcttgt-actctgtagATTGTGCATCATTGACTTGCACAGAACCTTTAACATATACGCCTCCTGGATCACCCTGCGGTTGTGTGTGGCCAATTCAAGTTAAATTGCGCCTTAGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccacctagttatgtgatatgcgtgtattgatcctattcctgattgacctttagATTGTATATCGGTGACTTGCTCTGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTGTGGCCACTTCAAGTTAAACTTCGCATCAACAT
                                          gattgac  putative branch site (score: 3)
                                                ccttt  CT-rich tract
       tagttat  TA-rich tract