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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaatctgttggtttactctatgcagtatagtccctgttggaattgttctagtaattcaattgggaattaagttggttaatttttgcttgcacagGCAATATTACGTGAATGTGGATGATACAATTGCACAACAG

Basic information

species Glycine max
transcript GLYMA15G02400.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176699|gb|HO026820.1|HO026820
EST:     ACATATCCTGACCCGTTGCAAGACAATCCTTCCTATTCTGTTGCTGC                         GCAATATTACGTGAATGTGGATGACGCAATTGCACAACAG
genomic: ACATATCCTGACCCGTTGCAAGACAATCCTTCCTATTCTGTTGTTGCgtaagtcaat ... gcttgcacagGCAATATTACGTGAATGTGGATGATACAATTGCACAACAG
EST: gi|13789748|gb|BG652339.1|BG652339
EST:     ACATATCCTGACCCGTTGCAAGACAATCCTTCCTATTCTGTTGTTGC                         GCAATATTACGTGAATGTGGATGATACAATTGCACAACAG
genomic: ACATATCCTGACCCGTTGCAAGACAATCCTTCCTATTCTGTTGTTGCgtaagtcaat ... gcttgcacagGCAATATTACGTGAATGTGGATGATACAATTGCACAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattgttctagtaattcaattgggaattaagttggttaatttttgcttgcacagGCAATATTACGTGAATGTGGATGATACAATTGCACAACAG
                                  ggttaat  putative branch site (score: 4)
                                        tttttgctt  CT-rich tract
                                    ttaattttt  TA-rich tract