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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgcccatcagtttttagttttttatttctctgactcgtgaccactaggattcttttagctgcaatttgtaatggatatttttaaattatctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTC

Basic information

species Glycine max
transcript GLYMA15G01520.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01520.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g05250.t01 (Vitis vinifera), 3'ss of exon 2
tttgcccatcagtttttagttttttatttctctgactcgtgaccactaggattcttttagctgcaatttgtaatggatatttttaaattatcta------ctgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTC
     |  | | ||  |  | |||| | || ||   | |     |  | |   ||| ||||     ||    ||   ||||||  || |||||        | |||||||| ||||| ||||| || ||||||||||| ||||| ||||| || || |||||||  || |||| | | ||||||||||||   ||||| ||| |||
----actgtaatttgatgttcttttctatcccttggttgcatttaacatgggacttgtagcattccttgaagatt--tattttctaactatctgattcatttctagGGGGTAGTTTATTGGCAACCACCCAAGCAAGCATTGGAGAAAGTAAAGGACCTTGTATGGGAACCTTCAGTCAGTCGTTATGGTGCTGATGATGGTCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193332407|gb|FK301147.1|FK301147
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCC-AAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|8282976|gb|BE020537.1|BE020537
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|19938456|gb|BQ081728.1|BQ081728
EST:     AGATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGATTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: AGATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|17402144|gb|BM178926.1|BM178926
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|298180177|gb|HO025392.1|HO025392
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|37995957|gb|CF807546.1|CF807546
EST:     ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAG                         GGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|14999981|gb|BI320795.1|BI320795
EST:     ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAG                         GGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|16995918|gb|BM085290.1|BM085290
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|151399034|gb|EV268905.1|EV268905
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|37994420|gb|CF806166.1|CF806166
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|193470298|gb|FK435077.1|FK435077
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|208234515|gb|GE030464.1|GE030464
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|208033626|gb|GD829157.1|GD829157
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCC
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCC
EST: gi|207718282|gb|GD699196.1|GD699196
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGGTGGTTTACTGGCAGCCTCCC
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGG-TGGTTTACTGGCAGCCTCCC
EST: gi|298191489|gb|HO038968.1|HO038968
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
EST: gi|8284765|gb|BE022324.1|BE022324
EST:     ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAG                         GGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCAACGAGGAGCTAAGAATGCCTTGTCTTTGGCCCAGgtcttttttc ... tctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaggattcttttagctgcaatttgtaatggatatttttaaattatctactgtagGGGGTGGTTTACTGGCAGCCTCCCAAGCAAGCGTTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTC
                   aatttgtaatggatat  TA-rich tract