1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtcttccatcctcccaaattaattaaatactatctcccattatctctttaattaattaaacttcaaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCAAATGGTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCC
species | Glycine max |
transcript | GLYMA15G00390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCC AATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCEST: gi|21676239|gb|BQ628590.1|BQ628590
genomic: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCCgtaagtcttc ... aaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATC
EST: CTCTGATGCTGCTGTTGTTCC AATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCEST: gi|16344305|gb|BI969900.1|BI969900
genomic: CTCTGATGCTGCTGTTGTTCCgtaagtcttc ... aaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATC
EST: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCC AATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCEST: gi|21677461|gb|BQ629812.1|BQ629812
genomic: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCCgtaagtcttc ... aaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATC
EST: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCC AATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCEST: gi|7924309|gb|AW830335.1|AW830335
genomic: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCCgtaagtcttc ... aaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATC
EST: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCC AATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATC
genomic: GAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCCgtaagtcttc ... aaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATC
taattaaatactatctcccattatctctttaattaattaaacttcaaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCAAATGGTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCC
aattaat putative branch site (score: 3)
attatctctttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcttccatcctcccaaattaattaaatactatctcccattatctctttaattaattaaacttcaaaatttcagAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCAAATGGTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG