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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgattaactacttcctctatagttatttttgattcaattaaatttatttatttaataagttcaagaaaaaaggaatctttatacttcagataaagctgttcttgaacatttttttttgtcattatcttagTTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG

Basic information

species Glycine max
transcript GLYMA14G37350.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348656|gb|BI974251.1|BI974251
EST:     CTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCA                         TTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGA
genomic: CTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCAgtatgtgatt ... attatcttagTTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGA
EST: gi|213603629|gb|DB966785.1|DB966785
EST:     CTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCA                         TTAACCGAGAAGATTTACAAGAATCTAGACNACATGACAAGACTTGTTAGA
genomic: CTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCAgtatgtgatt ... attatcttagTTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGA
EST: gi|17519247|gb|BM188289.1|BM188289
EST:     CTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCA                         TTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGA
genomic: CTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCAgtatgtgatt ... attatcttagTTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttatacttcagataaagctgttcttgaacatttttttttgtcattatcttagTTAACCGAGAAGATTTACAAGAATCTAGACAACATGACAAGACTTGTTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG
                                 tttttttttgtcatt  CT-rich tract
                                atttttttttgtcatt  TA-rich tract