1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctattagtattgtttgatgtttgcggtagcgattctacctcgcttacatgtttccctctcttgttagcattaacataagttatttctgtgacttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG
species | Glycine max |
transcript | GLYMA14G36610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|254347199|gb|GR856869.1|GR856869
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|10847409|gb|BF070096.1|BF070096
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|4283221|gb|AI440629.1|AI440629
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|151407616|gb|EV277431.1|EV277431
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|27426743|gb|CA938263.1|CA938263
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|151406931|gb|EV276746.1|EV276746
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|58017863|gb|CX704605.1|CX704605
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|192331092|gb|FK020312.1|FK020312
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|298171750|gb|HO021342.1|HO021342
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACCATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCAAATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|58017298|gb|CX704040.1|CX704040
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|209706270|gb|BW676285.1|BW676285
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|254333892|gb|GR848810.1|GR848810
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|151411907|gb|EV281718.1|EV281718
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|58021215|gb|CX707957.1|CX707957
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|298171455|gb|HO016487.1|HO016487
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCGTATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|151402755|gb|EV272568.1|EV272568
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|298196527|gb|HO041270.1|HO041270
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|151406677|gb|EV276492.1|EV276492
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|254334579|gb|GR844364.1|GR844364
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAEST: gi|254335321|gb|GR846818.1|GR846818
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
EST: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTG CCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
genomic: AAGGTCTCTCTTGGAGCTGAAATCACTATATTGGCCCTTCACACTCCTTGgtactctatg ... acttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCA
acatgtttccctctcttgttagcattaacataagttatttctgtgacttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG
cattaac putative branch site (score: 2)
cttgctc putative PPT
attaacataagttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattagtattgtttgatgtttgcggtagcgattctacctcgcttacatgtttccctctcttgttagcattaacataagttatttctgtgacttgctcagCCACACACAAGGTCATATAAGTTACTATGTTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - -ttgtttg
- - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - acctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtg