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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatccgagtttcattctacagtgctttgctttgctttgaattaataaataagctttccgattttatgcatgattgttgtttacggaagtttgtttgtacggaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCAGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTG

Basic information

species Glycine max
transcript GLYMA14G36280.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36280.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 3
gtgaatccgagtttcattctacagtgctttgctttgctttgaattaataaat--aagctttccgattttatgcatgattgttgtttacggaagtttgtttgtacggaatttgt-agGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCAGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTG
                      |         |||  |  |||| |  ||||  |    |   ||   | ||  | ||||   |||  || |   || |  ||||   ||| | |||| || ||||||||||| || || |||||||| || || || ||||||||||| ||||| || || ||||| ||||| || ||||||||||| ||||| |
--------------------gtatcaacaaaatttagtgagaatgatcaaattcacatatatagaagctttgatttattg--atttggggga---tgatgttacgagttttttcagGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAG

upper sequence: GLYMA14G36280.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 3
gtgaatccgagtttcattctacagtgctttgctttgctttgaattaataaataagctttccgattttatgcatgattgttgtttacggaagtttgtttgtacggaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCAGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTG
        |  ||   |||   | |  || |  |  |  |      |  | |  |   |  ||||| | || |   |   | ||  | |  ||   || |  |     ||||||| || ||||| || ||||| ||||||||||| ||| | || || |||||||| |||||||| || ||||| |||||||| |||||||| ||||||||||
-------tgttttgagttcagaattttttgggatcaccatttgcagaggactgtggactttgatttgaagcttacattacgattttgaa--ttgaattttttga----tgtagGGATTGGAACTCATTCCTTCAGAAAATTTCACATCGGTATCTGTAATGCAAGCCGTTGGATCAGTCATGACTAATAAATATAGTGAAGGGTATCCTGGTG

upper sequence: GLYMA14G36280.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S51_296V6.1 (Physcomitrella patens), 3'ss of exon 2
--gtgaatccgagtttcatt-ctacagtgctt-tgctttgctttgaa-------ttaataaataagctttccgattttatgcatgattgttgtttacggaagtttgtttgta-cggaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCAGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTG
   ||| | | ||     || | |   || || ||      | | ||       || ||   |    |  |   |||   || |||   |  | ||      |    | ||  |   |||   ||||  ||||  | || || || || |||||||||||  | || || ||||| ||||| || || || ||||| ||||| ||||||||||||||||||||| 
gtatgatttctagcactgtttccattatgtttatgtcagaatatcaagtggtgtttgatgcttgcattgccttttttagggcttgacgatgttgtatcttcctccactcgtgtcacgattgacagGGCCTCGAGTTGATCCCATCAGAGAATTTCACGTCTGTTTCAGTTATGCAGGCAGTAGGTTCCGTCATGACCAATAAGTACAGTGAAGGATATCCTGGT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396057|gb|EV265934.1|EV265934
EST:     ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG                         GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
genomic: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
EST: gi|298187285|gb|HO034434.1|HO034434
EST:     ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG                         GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
genomic: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
EST: gi|27426205|gb|CA937725.1|CA937725
EST:     GCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG                         GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
genomic: GCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
EST: gi|209724640|gb|BW651425.1|BW651425
EST:     ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG                         GGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA
genomic: ATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAGgtgaatccga ... gaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgattttatgcatgattgttgtttacggaagtttgtttgtacggaatttgtagGGGTTCGAACTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCAGTTGGATCGGTGATGACGAATAAATACAGTGAAGGATATCCTGGTG
                                              aatttgta  TA-rich tract