1 5' 3' | 2 5' 3' | 3 5' 3' |
...taagccaataatttatattgtctggatttttccttcttctgttttttggtgatggggctgttaacatcatgataattttattgctaatcttattatgaagAAAGCAATATGAGAAACTCCGCAGACAATGCCAGAAACTCTTGAAGCAAAGCAATGAGAGAAATAAGTTAAATGAAGTTGGTGAAATCAGCTATGAGGAA
species | Glycine max |
transcript | GLYMA14G25810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACTTAGACAGCACCAAAGATGAAAGAGATGTTAAAAGAACTCAAAATAG AAAGCAATATGAGAAACTCCGCAGACAATGCCAGAAACTCTTGAAGCAAAG
genomic: GACTTAGACAGCACCAAAGATGAAAGAGATGTTAAAAGAACTCAAAATAGgtgggcatgc ... tattatgaagAAAGCAATATGAGAAACTCCGCAGACAATGCCAGAAACTCTTGAAGCAAAG
ttggtgatggggctgttaacatcatgataattttattgctaatcttattatgaagAAAGCAATATGAGAAACTCCGCAGACAATGCCAGAAACTCTTGAAGCAAAGCAATGAGAGAAATAAGTTAAATGAAGTTGGTGAAATCAGCTATGAGGAA
tgctaat putative branch site (score: 2)
tcttatt CT-rich tract
atgataattttattgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagccaataatttatattgtctggatttttccttcttctgttttttggtgatggggctgttaacatcatgataattttattgctaatcttattatgaagAAAGCAATATGAGAAACTCCGCAGACAATGCCAGAAACTCTTGAAGCAAAGCAATGAGAGAAATAAGTTAAATGAAGTTGGTGAAATCAGCTATGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - -ttgtctg
- - - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgata