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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagcaattcttccacctaaattaaataacctgtaagttgtatattgtcatatgagctggatgtatgtaattctttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG

Basic information

species Glycine max
transcript GLYMA14G24270.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 3'ss of exon 4
taagcaattcttccacctaaattaaataacctgtaagttgtatattgtcatatgagctggatgtatgtaattc---tttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
|     || | |     |  | |   || | | |   |  | || || | | |    |  || | |    |||    | |||  |     |||||||| ||||||| || || ||||||||||| |||||||||||||| || || || || ||||||||||||||| | |||| ||||||   ||||
ttgatgatacctatcttttcactttgtaccatatgc-tgatttactgccttgtt--ttatatttttaaggttcatactaatcaaaggtgattcttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATATGGTGCTTGTGAGTCCATGTATAAGCCAAGCATG

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 3'ss of exon 5
-taagcaattcttccacctaaattaaataacctgtaagttgtatattgtcatatgagctggatgtatgtaattctttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
 |  |   |   |||   |   | | ||  |   | ||  || |     | | |       ||   ||| |     | |     | |||  || | |||||||| || || || ||||| ||||| || || || ||||| |||||||| ||||||||||||||| | ||||  || ||  |||||
ttttggtctaagtccgtgtgcctgatatgtctgattaggcgtttgaacgcttgtttctcatattcttgtgagctgat-tgaggatgtttatttctgtgcagGGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G045371_T02 (Zea mays), 3'ss of exon 4
--taagcaattct-tccacctaaattaaataacctgtaagttgtatattgtcat-atgagctggatgtatgtaattctttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
  |    | ||   |    ||   |  | |  |  ||   ||     ||||  | |||| ||  || ||| ||| |  | |||     ||  | |  ||||||||||||| || || ||||||||||||||||| || ||||| || ||| ||||||||||||||||  | ||||  ||||| ||||||
tatttatagttggatattgcttgttccagttcctagtgttttagtgcttgtagtcatgacctttatttatttaaatgatcatcc----atgctttactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTATGGTGCTTGTGAATCCATGTACAAGCCGGACATG

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G092975_T01 (Zea mays), 3'ss of exon 4
taagcaattcttccacctaaattaaataacctgtaagttgtatattgtcatatg-agctggatgtatgtaattctttatcttactattt----tcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
     | |||||        | |   |   | |||  |  | | || |    || ||   |     | || || | ||  ||| ||| |    | |  ||||||||||||| || || ||||||||||| ||||| || ||||| || ||| ||||||||||||||||| | ||||  |||||  |||||
---atagttctttggatattacttgtt--tcagtacctattgttttattgcttgtagtcagggacctttatttatctaaattattatctgtgctttactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G117544_T02 (Zea mays), 3'ss of exon 3
taagcaattcttccacctaaattaaataacctgtaagttgtata---ttgtcatatgagctggatgtat-gtaattctttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
|||    ||   ||   | || |   |  | |  |   | ||     ||| ||||||  ||   |   | |||||   |||||  | ||||| ||| ||| |||||| || |||||||||||||| || || || ||||| || ||||| || ||||||||||||||| | |||| ||||||  |||||
taat--gttaagcctgttgaaattcgttccttacatcctatactgacttgccatatggcctctctaccttgtaatc--ttatcagagtatttccttttattcagGGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 3'ss of exon 4
taagcaattcttccacctaaattaaataacctgtaagttgtatattgtcatatgagctggatgtatgta-attctttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
| |||   | |       |   | ||||   |  |  || ||      |||   || || |    ||   || | ||  |      | |   |  |||||||||| | || |||||||||||||| || || ||||| || || ||||| |||||||| ||||| || ||||| || || || |||
tgagctgatttaaatatgattcttaatatagttgagattttac-cgaacatgatagttgcaatggtgagcatgccttgacgcttgttctctctaaatgcagGGAGTTAGCTAAAGATTTTGTTGTCTCGGGAACTGCTTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACCAGATATG

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 3'ss of exon 4
taagcaattcttccacctaaattaaataacctgtaagttgtatattgtcatatgagctggatgtat---gtaattctttatctta-ctattttctt--gtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
   | | || ||  || |||    ||  ||   |   || ||| || |  |||    | ||| ||    | ||    | ||  ||  | || ||||    |||||| ||| | || |||||||||||||| ||||| ||||| || || || || ||||| ||||||||||||||||  ||||| || |||
---ggacttgttgtacttaa---gaagtactgttgcattttattttattttattttgttgatataacagggaacatctaataatagttgttctcttcgaaatgcagAGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATG

upper sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 4
-taagcaattcttccacctaaattaaataacctgtaagttgtatattgtcat-atga-gctggatgtatgtaattctttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
 |     ||| |      | |   ||     || |  |    |||||| ||| |||  |||  |  ||  |  |  || || || ||  || ||   || |||||||||||| ||||||||||||||| |||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||||
ttgtctgattata--ggttgatccaagctttctttttgggtgatattgacattatggtgctttaccta-attttctttaatttttcttcttcctcacatccagGGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318541|gb|FK011365.1|FK011365
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGTATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|19346754|gb|BM891634.1|BM891634
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|9819697|gb|BE555210.1|BE555210
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCCTGAGTCTCTGT
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCAT-CTGAGTCTCTGT
EST: gi|298182182|gb|HO026357.1|HO026357
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|298176982|gb|HO023343.1|HO023343
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATCGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|298191795|gb|HO035877.1|HO035877
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|208277689|gb|GE078266.1|GE078266
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|207769518|gb|GD742112.1|GD742112
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAG
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAG
EST: gi|298198899|gb|HO042262.1|HO042262
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|4395893|gb|AI494890.1|AI494890
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|7233908|gb|AW569250.1|AW569250
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|298191024|gb|HO038503.1|HO038503
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|16348147|gb|BI973742.1|BI973742
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
EST: gi|298177393|gb|HO027174.1|HO027174
EST:     GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAA                         GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA
genomic: GGGGATGAAGACAAACCATTCATTTGCACAATGGATTGTATTGGCGCAAAgtaagttgaa ... ttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcatatgagctggatgtatgtaattctttatcttactattttcttgtatgcagGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG
                               atcttac  putative branch site (score: 3)
                         ttctttatcttactat  CT-rich tract
                      taattctttatcttac  TA-rich tract