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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttaatatttagtcagcattgtctcacatgcttttgagctgacatctcacctttttctttcctccgagctctgcaaaatctataaagatgataatattacattctctatctatctttgcagTGTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA

Basic information

species Glycine max
transcript GLYMA14G24140.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24140.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G060800_T02 (Zea mays), 3'ss of exon 2
gtatgttaatatttagtcagcattgtctcacatgcttttgagctgacatctcacctttttctttcctccgagctctgcaaaatctataaagatgataatattacat-tctctatctatct-ttgcagTGTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
                  || |   ||    ||||||| |  |||| |      ||||| ||   |  ||||       ||    | |||   ||   || ||  |  || ||  | ||   || |||  | ||  | || |||||||||||||| || || ||||| |||||||||||| | || ||||||||||| || || || || || |||||| | |||||
----------------aaagaacaatcg---atgcttt-ggcctgata----gacttttcct---cgacgagtcaaaagaagaagaaaaaagagagggtactaattacctgtacttgtccactgtagTACTCTCTATCGACCCAGTCATTGGAGCAATCGCTGCTGGAAATGCTGTTGTTCTGAAGCCATCAGAAATAGCGCCAGCTACCTCGTCACTGTTAGCAAA

upper sequence: GLYMA14G24140.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G118800_T01 (Zea mays), 3'ss of exon 3
gtatgttaatatttagtcagcattgtctcacatgcttttgagctgacatctcacctttttctttcctccgagctctgcaaaatctataaagatgataatattacattctc-tatctatct-ttgcagTGTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
                         |  |||  |   |  | |  |    |   |  ||| ||            |      |     || | |  |||||||  | ||  ||  | ||   || |||  | ||  | || |||||||||||||| || |||||||| |||||||||||| | || || |||||||| || || || || || ||| |||| || ||
------------------------attccactag---taaaaccaatgctttgaccgtttattcatggtattaattaggcttttgggcaacaagccaatattaattacttgtacttgtccactgtagTACTCTCGATCGACCCAGTCATTGGAGCAATCGCAGCTGGAAATGCTGTTGTTCTGAAGCCGTCAGAAATAGCGCCAGCTACCTCGTCATTGCTAGCGAA

upper sequence: GLYMA14G24140.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G44170.3 (Arabidopsis thaliana), 3'ss of exon 3
gtatgttaatatttagtcagcattgtctcacatgcttttgagctgacatctcacctttttctttcctccgagctctgcaaaatctataaagatgataatattacattctctatctatctttgcagTGTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
                                    | ||  | ||   || |  |   | ||  ||   || | |   | || |   | ||    | | | ||| | | | | | | ||   |||||||||  ||||||| || ||||| || ||| | ||||| ||||||||||||||||| ||||||||| | ||||| ||  | ||| | |||||  | ||
-----------------------------------gtatgttccgatcactgat-taagttttaactataagttatattacattttgtatga----agtgtgacacttttttttttttttgcaagTGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTGTTTTAAAGCCATCAGAATTGGCTCCAGCTTCGTCAGCTCTGCTCACTAA

upper sequence: GLYMA14G24140.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g02440.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttaatatttagtcagcattgtctcacatgcttttgagctgacatctcacctttttctttcctccgagctctgcaaaatctataaagatgataatattacattctctatctatctttgc-agTGTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
              ||| |  || ||     |   ||||||           | || |||   |  |  |  |       ||| | ||      ||||| |||  |   | |||| ||||| | ||||||  | |||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||  ||||||||| || ||| || | || ||
------------caagttattatcgtgattgaccattttga-----------atctctttaagttgtatggacaggattcaattttta---gcaataattttatttgtacaatctctctttcccagTGTTAGCTCTTGATCCAGCCATTGGAGCTATTGCAGCTGGTAATGCTGTGGTTTTGAAACCATCAGAACTTTGTCCTGCCACTTCCTCATTGATTGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctctgcaaaatctataaagatgataatattacattctctatctatctttgcagTGTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCTGGTAATGCTGTTGTTTTAAAACCATCAGAAATTGCTCCTGCCACATCATCACTGCTGGCAAA
                                   ttctctatctatcttt  CT-rich tract
        aaaatctataaagatg  TA-rich tract