Sequence
atgc intronic sequence ATGC exonic sequencegtatgttctttgatctcttctgaagagtcgtgttatatctcttgcatcattttccttggggtcatatcaagaaattaacttactcttaatttttgtcatttccaaatctagGATTTCACAGCTAAACTCTCTGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACACGTAACAACACGCATAATGGGAACACAAGGTTATG
Basic information
species | Glycine max |
transcript | GLYMA14G12710.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G12710.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g02070.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttctttgatctcttctgaagagtcgtgttatatctcttgcatcattttccttggggtcatatcaagaaattaacttactcttaatttttgtcatttccaaatctagGATTTCACAGCTAAACTCTCTGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACACGTAACAACACGCATAATGGGAACACAAGGTTATG
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-----------------------------gtaagctcttccccgcctgctctctccattgtcaatctcttcaaaatggctcaaagcttactcttctttcttct--ttccagGATTACACTGCTAAACTCTCTGATTTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATG
upper sequence: GLYMA14G12710.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S31_254V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatgttctttgatctcttctgaagagtcgtg--ttatatctcttgcatcattttccttggggtcatatcaagaaattaacttactcttaatttttgtcatttccaaatctagGATTTCACAGCTAAACTCTCTGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACACGTAACAACACGCATAATGGGAACACAAGGTTATG
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-----------aatattttgtacgcaatagagactttcgtttcgtatagtctgttccttgtatgggacttgatgtcatcctctgtcctcaaacctagt--tcttgggtgtcagGATTACACAGCTAAGCTATCTGATTTTGGCCTAGCGAAAGATGGGCCTGAAGGAGACAAAACTCACGTATCAACACGTGTCATGGGCACCTATGGCTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggggtcatatcaagaaattaacttactcttaatttttgtcatttccaaatctagGATTTCACAGCTAAACTCTCTGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACACGTAACAACACGCATAATGGGAACACAAGGTTATG
tttttgtcatttcc CT-rich tract
aaattaacttactctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttctttgatctcttctgaagagtcgtgttatatctcttgcatcattttccttggggtcatatcaagaaattaacttactcttaatttttgtcatttccaaatctagGATTTCACAGCTAAACTCTCTGATTTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACACGTAACAACACGCATAATGGGAACACAAGGTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA