1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtgtaatttcttacctatgacatagcaccatgatcccttagcctgatgttctccaacttgataaatcccgagaataactattttttcccctcctgccaaactgtttttctccacagCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGCGA
species | Glycine max |
transcript | GLYMA14G12220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG CTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCEST: gi|120496388|gb|EH224555.1|EH224555
genomic: CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatt ... ttctccacagCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
EST: CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAG CTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
genomic: CAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatt ... ttctccacagCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATC
taaatcccgagaataactattttttcccctcctgccaaactgtttttctccacagCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGCGA
gaataac putative branch site (score: 2)
ctgtttttctccac putative PPT
agaataactatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaatttcttacctatgacatagcaccatgatcccttagcctgatgttctccaacttgataaatcccgagaataactattttttcccctcctgccaaactgtttttctccacagCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA