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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcattcagtaattgtcatgtattttcatgccacttttctgctgcaatcttgatatcttataatggacctaccttttacttgcagGATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGACTCTACTGTTTATCAACTTGGTTTCCATGTTGGACTCAAAGGGCAGTAT

Basic information

species Glycine max
transcript GLYMA14G11780.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11780.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 3'ss of exon 3
gtatgg-cattcagtaattgtcatgtatt-ttcatgccact--tttctgctgcaatct---tga----tatcttataatggacctaccttttacttg-cagGATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGACTCTACTG---TTTATCAACTTGGTTTCCATGTTGGACTCAAAGGGCAGTAT
||  || ||  |  | |||   ||  ||  ||||    |||  ||||      ||| |   |||     ||||| || || | | ||| || |  || |||||| || |||||||||||||| |||||||||||||   || | |||  ||| ||| ||    ||||||| ||||| |  |||||||| || ||||  ||    
gtgggggcaccctcttatttggatccataattcaaattactaatttccatgagaatttctttgaaccgcatcttttattgaatcaaccattcatgtgacagGATTCTGGATAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAATCTCCTCCTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716722|gb|BW654317.1|BW654317
EST:     ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACAT                         GATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGA
genomic: ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATgtatggcatt ... ttacttgcagGATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGA
EST: gi|209711818|gb|BW674078.1|BW674078
EST:     ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACAT                         GATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGA
genomic: ACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATgtatggcatt ... ttacttgcagGATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacttttctgctgcaatcttgatatcttataatggacctaccttttacttgcagGATCCTTGATAACCTTCCTCTGGTTGTTCCCATAAAACGGATGGATGCAGACTCTACTGTTTATCAACTTGGTTTCCATGTTGGACTCAAAGGGCAGTAT
                 tcttgat  putative branch site (score: 4)
                                     cctaccttttactt  putative PPT
                   ttgatatcttataat  TA-rich tract