1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agaattttgtgatggagtaaagaacaagcaagcaagttaagaggacaaaccttggtcattgatatattttttgaattcatggtgttgattattgttacagAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTCCCACCATATGCTACCAGATTTGCTGA
species | Glycine max |
transcript | GLYMA14G11500.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
caaaccttggtcattgatatattttttgaattcatggtgttgattattgttacagAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTCCCACCATATGCTACCAGATTTGCTGA
tgttgat putative branch site (score: 4)
attgatatattttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaattttgtgatggagtaaagaacaagcaagcaagttaagaggacaaaccttggtcattgatatattttttgaattcatggtgttgattattgttacagAAATATCTACAATCTACCAGTGTGAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTCCCACCATATGCTACCAGATTTGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - gatggag
- - - - - - - - - -aagaacaa
- - - - - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - - - acaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgttg