Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagccaaaaaagtctttcactatttgtactgtgatttggtttcttattggtattcgactatacattttgttaatctctttttgggttgacaaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGGTGCGGGTTTGGGTTTGGGTTTGGAAGACGAAGACGAAG

Basic information

species Glycine max
transcript GLYMA14G11400.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015897|gb|CX702639.1|CX702639
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: gi|6069841|gb|AW099441.1|AW099441
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: gi|18720212|gb|BM523244.1|BM523244
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: gi|31462913|gb|CD404941.1|CD404941
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: gi|58016180|gb|CX702922.1|CX702922
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: gi|193461784|gb|FK426325.1|FK426325
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: gi|193607569|gb|FK557448.1|FK557448
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAA-GCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
EST: gi|193497323|gb|FK461157.1|FK461157
EST:     AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAG                         CGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT
genomic: AGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGgtaagcaagt ... aaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggtattcgactatacattttgttaatctctttttgggttgacaaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGGTGCGGGTTTGGGTTTGGGTTTGGAAGACGAAGACGAAG
             tatacattttgttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagccaaaaaagtctttcactatttgtactgtgatttggtttcttattggtattcgactatacattttgttaatctctttttgggttgacaaaaatgcagCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGGTGCGGGTTTGGGTTTGGGTTTGGAAGACGAAGACGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - -aaaaaag
- - - - - - -ctttcac
- - - - - - - - - - - - - tactgtg