1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacaaagccaagtgaaagtattctggctttggttgatatgtcaaaaatgtgttggacctaaaaattttgttccgatggcggttcctgctacctgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACCTCA
species | Glycine max |
transcript | GLYMA14G08520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
aatgtgttggacctaaaaattttgttccgatggcggttcctgctacctgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACCTCA
acctaaa putative branch site (score: 3)
taaaaattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaaagccaagtgaaagtattctggctttggttgatatgtcaaaaatgtgttggacctaaaaattttgttccgatggcggttcctgctacctgttacagGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- caaagcc
- - - - - - - - - - - - -gctttgg
- - - - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgct