1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttgtggcttaggtactcgttttagatactttggtgcatagatatggtctgaaatactataataaggttaatatgtcatttttcagCATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAG
species | Glycine max |
transcript | GLYMA14G08180.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAATTCGCTGG CATGACGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTTEST: gi|6454433|gb|AW185116.1|AW185116
genomic: GAAATTCGCTGGgtaagttgtg ... catttttcagCATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTT
EST: AGGAGACACTCAGGTGGAGATCAACCTATAAGCCAGAGGAAATTCGCTGG CATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTTEST: gi|6724789|gb|AW309188.1|AW309188
genomic: AGGAGACACTCAGGTGGAGATCAACCTATAAGCCAGAGGAAATTCGCTGGgtaagttgtg ... catttttcagCATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTT
EST: AGGAGACACTCAGGTGGAGATCAACCTATAAGCCAGAGGAAATTCGCTGG CATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTT
genomic: AGGAGACACTCAGGTGGAGATCAACCTATAAGCCAGAGGAAATTCGCTGGgtaagttgtg ... catttttcagCATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTT
tggtgcatagatatggtctgaaatactataataaggttaatatgtcatttttcagCATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAG
ggttaat putative branch site (score: 4)
tcatttttc putative PPT
aaatactataataagg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtggcttaggtactcgttttagatactttggtgcatagatatggtctgaaatactataataaggttaatatgtcatttttcagCATGAGGTTGCAATGGAAGGAGAGACTGGGAAATTGTATAGAGCAAGTTTTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA