Sequence
atgc intronic sequence ATGC exonic sequencegtgcatgactatgttttgggtggaacataaatagggacagttaaatattaagtgagtttgtgacaattactctgttttttgcagGCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
Basic information
species | Glycine max |
transcript | GLYMA14G07980.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G07980.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0070g00740.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------gtgcatgactatgttttgggtggaacataaatagggacagttaaatattaagtgagtttgtgacaattactctgttttttgcagGCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
| || | || | |||| | | | || | | | | || | |||| | | ||| | |||| ||||||||||||||||| || ||||||||||||||||| |||
gcacatgctgtttttttggttttctttcttttcacttaaaatagtttaagctccaagtctttattttca-tacagttttcttattaaga--tgagcatacatggagtct--tattattgttttgttccttgcagGCAGAGGAATTAACTAAAGAGGATTTTAAAGGGGTAAAG
upper sequence: GLYMA14G07980.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g12750.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------gtgcatgactatgttttgggtggaacataaatagggacagttaaatattaagtgagtttgtgacaattactctgttttttgcagGCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
| || | || | |||| | | | || | | | | || | |||| | | ||| | ||| ||||||||||||||||| || ||||||||||||||||| |||
gtgcatgcttcttttctggttttctttcttgtcacttaaatagtttaggctccaagtctttcttttca-tacagttttcttattaaga--tgagcatacatggagtct--tattattgttttgtcccttgcagGCAGAGGAATTAACTAAAGAGGATTTTAAAGGGGTAAAG
upper sequence: GLYMA14G07980.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g07610.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------gtgcatgactatgttttgggtggaacataaatagggacagttaaatattaagtgagtttgtgacaattactctgttttttgcagGCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
| || | || | |||| | | | || | | | | || | |||| | | ||| | ||| ||||||||||| ||||| || ||||||||||||||||| |||
gtgcatgctgcttttttagttttatttcttttcacttaaaatagtttaggctccaagtctttcttttca-tacagttttcttattaaga--tgagcatacatagagtct--tattattgttttgtcccttgcagGCAGATGAATTAACTAAAGAGGATTTTAAAGGGGTAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8283366|gb|BE020927.1|BE020927EST: TGGGAAACCGTACCATGCGACCCTGTCTCTCTAATGCTGTGAAAGTTCAG GCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
genomic: TGGGAAACCGTACCATGCGACCCTGTCTCTCTAATGCTGTGAAAGTTCAGgtgcatgact ... ttttttgcagGCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatagggacagttaaatattaagtgagtttgtgacaattactctgttttttgcagGCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
ttactctgtttttt CT-rich tract
acagttaaatattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcatgactatgttttgggtggaacataaatagggacagttaaatattaagtgagtttgtgacaattactctgttttttgcagGCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT