1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taattaattaataaacttatctgagattaatgagaattcaagaaatgcccttcaacttgaataattaaaaacttgattgtgttaattctggtgatgacagTTGATACTCTGAAGGCAACTGCTGTCGACAAAATCCCCTCTGATTTAGAAGGGATGGAAGCATTAATGGGACATCTATTGGCCTTGATCGATGACATTCA
species | Glycine max |
transcript | GLYMA14G06690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAGAAATTCCTTTAGATCTTCGTATGGTTGAAGCTGAGCGCATTGGAT TTGATACTCTGAAGGCAACTGCTGTCGACAAAATCCCCTCTGATTTAGAAGEST: gi|192324171|gb|FK017902.1|FK017902
genomic: TCAAGAAATTCCTTTAGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATgtatgtattg ... gtgatgacagTTGATACTCTGAAGGCAACTGCTGTCGACAAAATCCCCTCTGATTTAGAAG
EST: TCAAGAAATTCCTTTAGATCTTCGTATGGTTGAAGCTGAGCGCATTGGAT TTGATACTCTGAAGGCAACTGCTGTCGACAAAATCCCCCTCTGATTTAGAA
genomic: TCAAGAAATTCCTTTAGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATgtatgtattg ... gtgatgacagTTGATACTCTGAAGGCAACTGCTGTCGACAAAATCCCC-TCTGATTTAGAA
tgcccttcaacttgaataattaaaaacttgattgtgttaattctggtgatgacagTTGATACTCTGAAGGCAACTGCTGTCGACAAAATCCCCTCTGATTTAGAAGGGATGGAAGCATTAATGGGACATCTATTGGCCTTGATCGATGACATTCA
tgttaat putative branch site (score: 3)
aataattaaaaacttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattaattaataaacttatctgagattaatgagaattcaagaaatgcccttcaacttgaataattaaaaacttgattgtgttaattctggtgatgacagTTGATACTCTGAAGGCAACTGCTGTCGACAAAATCCCCTCTGATTTAGAAGGGATGGAAGCATTAATGGGACATCTATTGGCCTTGATCGATGACATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattgtg