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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcttgctgcaatctctctccctctactctaaagtctaaactattgctaagtagctaatgtttcccattttttttctttcctgtgcttgcggtagttggtcattatttactactgatttccatgttacatctatttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgtgcttgctgcaatctctctccctctactctaaagtctaaactattgctaagtagctaatgtttcccattttttttctttcctgtgcttgcggtagttggtcattatttactactgatttccatgttacatct---atttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC
|| | | | | | | | | || |||| | | | | |||| | | ||| | | | ||| ||| | | | ||||||| |||||||||||||||| ||| ||||| || || ||||| || |||| ||||||||| ||||| || || || ||||||| || |||||||| || |
----------------------------------------------------------------------------------tctatccaactattcatgagacgta--taacccctgaatgttagatgagatctcagaatattatagaattctgtcatttatgtcttctctatcttaatgtagGTGCAAACTGATCTCCAGTATATTAAAGAAGATATAAATGCCGTTGAGAGACATAGAATAGATTTATACCGAGCTAGGGACAGATATTCTGTAAAGTTGC

upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgcttgctgcaatctctctccctctactctaaagtctaaactattgctaagtagctaatgtttcccattttttttctttcctgtgcttgcggtagttggtcattatttactactgatttccatgttacatctatttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC
| || | || | | || || || || | | || | |||| |||| || ||| | | ||| | || | ||||| ||||| ||||||||||| | | || |||||||| |||| ||| |||| ||||||||| || ||||| || | ||||||||||||| |||||| | |
---------------------------------------------------------------------gacctgctttaggattacttttctgaaaactg-tctttgttga-----aactttga----acatggatttataattaggttgatggatttcatttttcccctt--tctgtagACACAAAATGATCTCCAGTATGTCAAGGAGGACATAAATGTTGTAGAGAGACATAGAATAGAGTTGTACCGGGTGAGGGACAGGTACTCAGTAAAACTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacatctatttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC
                                          ctttcattt  CT-rich tract
 atctatttttacttat  TA-rich tract