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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcttgctgcaatctctctccctctactctaaagtctaaactattgctaagtagctaatgtttcccattttttttctttcctgtgcttgcggtagttggtcattatttactactgatttccatgttacatctatttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgtgcttgctgcaatctctctccctctactctaaagtctaaactattgctaagtagctaatgtttcccattttttttctttcctgtgcttgcggtagttggtcattatttactactgatttccatgttacatct---atttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC
                                                                                   || | |      |  |  | | |   | ||  |||| |   |  | | ||||   | | |||   | | |    |||  ||| |  |   |     ||||||| |||||||||||||||| ||| ||||| || || ||||| || |||| ||||||||| ||||| || || ||  ||||||| || |||||||| || |
----------------------------------------------------------------------------------tctatccaactattcatgagacgta--taacccctgaatgttagatgagatctcagaatattatagaattctgtcatttatgtcttctctatcttaatgtagGTGCAAACTGATCTCCAGTATATTAAAGAAGATATAAATGCCGTTGAGAGACATAGAATAGATTTATACCGAGCTAGGGACAGATATTCTGTAAAGTTGC

upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgcttgctgcaatctctctccctctactctaaagtctaaactattgctaagtagctaatgtttcccattttttttctttcctgtgcttgcggtagttggtcattatttactactgatttccatgttacatctatttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC
                                                                         |  ||      |    ||  |  |  || || || || |      | ||  |    ||||  |||| || |||     |    |    |||    | ||  | |||||  ||||| ||||||||||| | | || |||||||| |||| ||| |||| ||||||||| || ||||| || |   ||||||||||||| |||||| | |
---------------------------------------------------------------------gacctgctttaggattacttttctgaaaactg-tctttgttga-----aactttga----acatggatttataattaggttgatggatttcatttttcccctt--tctgtagACACAAAATGATCTCCAGTATGTCAAGGAGGACATAAATGTTGTAGAGAGACATAGAATAGAGTTGTACCGGGTGAGGGACAGGTACTCAGTAAAACTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacatctatttttacttattgcaacaattggtgtttcgtgctttcatttgtagGTACAAACTGATCTCCAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGATTTGTATCGTGCACGGGACAGGTACTCTGTAAAATTAC
                                          ctttcattt  CT-rich tract
     atctatttttacttat  TA-rich tract