1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgatttggcacacaatatatattttcttagacaatactcttctataaagttggttaattttccaattcaatagccaaggtttatatgattcattattgtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCTAGCAAGGAGTCACCAGGATCAAACT
species | Glycine max |
transcript | GLYMA14G05020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGEST: gi|254321139|gb|GR827588.1|GR827588
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGEST: gi|16277108|gb|BI942208.1|BI942208
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGEST: gi|27808964|gb|CB063386.1|CB063386
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGEST: gi|23064170|gb|BU578943.1|BU578943
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGEST: gi|254321138|gb|GR827587.1|GR827587
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
EST: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAG GTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
genomic: TCAATGACGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGgtgatttggc ... gtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTG
gttaattttccaattcaatagccaaggtttatatgattcattattgtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCTAGCAAGGAGTCACCAGGATCAAACT
ggttaat putative branch site (score: 4)
tttatatgattcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttggcacacaatatatattttcttagacaatactcttctataaagttggttaattttccaattcaatagccaaggtttatatgattcattattgtgctcacagGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAATCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCTAGCAAGGAGTCACCAGGATCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG