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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctcaatagtttgcatactgtgcttgattgattatacctgttatactgtgacccatatagctgtaatggttactgttataactattatcagatttccgtgattttcccataagcaacatattctttcatttaaggcattgaattttcttaatcatcagTCTTTGATGGAGGAAATAGCTCCAACATGGGTAAATATTTCATTGAGAATGAAAAATGATCCAGAGACTGATGAAACTTTTGGATGGGTGCTTGAAAT

Basic information

species Glycine max
transcript GLYMA14G03930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtctcaatagtttgcatactgtgcttgattgattatacctgttatactgtgacccatatagctgtaatggttactgttataactattatcagatttccgtgattttcccataagcaacatattctttcatttaaggcat-tgaattttcttaatcat--cagTCTTTGATGGAGGAAATAGCTCCAACATGGGTAAATATTTCATTGAGAATGAAAAATGATCCAGAGACTGATGAAACTTTTGGATGGGTGCTTGAAAT
                                                                    | |   | |||||| | | |     | ||      |  |||| | ||   ||  |||||  |  ||| | | | | | || |  ||||    |  |||||     |||||||||| || || |||||| | |||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||||| |||||
-----------------------------------------------------------------tcttcactataactgttgttatttggggctgaccatttttctttttctatgt-cacgatatttctctattgatgtcttattaactgacttatctgtttcagTCCCAACTGGAGGAAATTGCACCTACATGGATGAATATTTCTTTGAGAATGAAAGATGATCCAGAGACAGATAAAGCTTTTGGATGGGTGCTAGAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccataagcaacatattctttcatttaaggcattgaattttcttaatcatcagTCTTTGATGGAGGAAATAGCTCCAACATGGGTAAATATTTCATTGAGAATGAAAAATGATCCAGAGACTGATGAAACTTTTGGATGGGTGCTTGAAAT
                                          tcttaat  putative branch site (score: 3)
                                       ttttctt  CT-rich tract
              atattctttcatttaa  TA-rich tract