Sequence
atgc intronic sequence ATGC exonic sequence...aataagtttattatatctaaatgtacatatagtttgtgcatgtgtgcgcaagtgagcacatggtagttactttttaattggaaacttattggtgctgtagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACG
Basic information
species | Glycine max |
transcript | GLYMA14G03760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------aataagtttattatatctaaatgtacata-tagtttgtgca-tgtgtgcgcaagtgagcacatggtagttactttttaattggaaacttattg-gtgctgt--agGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACG
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gtgagtagtcttgtaccctctgaaatttctcacaattctgaataattgatcttggagttagcagagttgttaatgaagtgatttcttatgtgaa-atgtgcttctatgtttttgtttgcctaactgtgatgtgttattcagGTTGGAGATTCTGATCAGAAACTAGCAGATGGAATTACGACATATTCTATCATAGCAGATTCTTATGGAAGAGCATCCATTATTGGTCCTCTTGTAACG
upper sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------aataagt-ttattatatctaaatgtacatatagtttgtgcatgtgtgcgcaagtgagcacatggtagttactttttaattggaaacttattggtgctgtagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACG
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gtgagtttggagagtttgtttttccatttcttattcgctggttgtagtaactattatccttttccaagctatattatgaaaaggcatgttcttaactatttgattcttatgactgcaaacttattaatattggatgttcactgtagGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254333821|gb|GR848739.1|GR848739EST: TAAAGCAGATTTCGCGCAATTACCTGAATAATCCCCTGACCATTGATCTT GTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATT
genomic: TAAAGCAGATTTCGCGCAATTACCTGAATAATCCCCTGACCATTGATCTTgtgagtataa ... ggtgctgtagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcgcaagtgagcacatggtagttactttttaattggaaacttattggtgctgtagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACG
ttttaat putative branch site (score: 3)
tagttactttttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aataagtttattatatctaaatgtacatatagtttgtgcatgtgtgcgcaagtgagcacatggtagttactttttaattggaaacttattggtgctgtagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - -gcaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgg