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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatgttccattctcttaaaaatattattcagcagacttctccagtgaaatgaaaaaactcaatgtgattttttgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAG

Basic information

species Glycine max
transcript GLYMA14G03100.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208229571|gb|GE020868.1|GE020868
EST:     GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
genomic: GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAGgtcaatgttc ... tgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
EST: gi|207806015|gb|GD779192.1|GD779192
EST:     GAATCTAAACAG                         GCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
genomic: GAATCTAAACAGgtcaatgttc ... tgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
EST: gi|208178707|gb|GD977876.1|GD977876
EST:     GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
genomic: GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAGgtcaatgttc ... tgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
EST: gi|208272616|gb|GE067942.1|GE067942
EST:     GAAGCGTCCAAATTAAAACGACAAATCAGGGACATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
genomic: GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAGgtcaatgttc ... tgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
EST: gi|208309977|gb|GE109747.1|GE109747
EST:     GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCCGAATCTAAACAG                         GCACATCCTTGGTGAAGCTCTTAGCT
genomic: GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAGgtcaatgttc ... tgcattccagGCACATCCTTGGTGAAGCTCTTAGCT
EST: gi|193521334|gb|FK480375.1|FK480375
EST:     GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAG                         GCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA
genomic: GAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAGAATCTAAACAGgtcaatgttc ... tgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagcagacttctccagtgaaatgaaaaaactcaatgtgattttttgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAG
                                        ttttttgc  CT-rich tract
                   aaatgaaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaatgttccattctcttaaaaatattattcagcagacttctccagtgaaatgaaaaaactcaatgtgattttttgcattccagGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTGAAGGAATTAAAGAACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA