1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttaatatgcgtcttgcttctgtgtttgtgttcgtttacagattttttgaattaacttcactatttttattaatttggacaagttggtgctttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCTGCTGCTTGTTGCTC
species | Glycine max |
transcript | GLYMA14G02260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGTGGTTGAGCTGAATAATATGCATAGGCAG GTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCTEST: gi|192312358|gb|FK005362.1|FK005362
genomic: ACGTGGTTGAGCTGAATAATATGCATAGGCAGgtattgtatt ... tttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCT
EST: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAG GTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCTEST: gi|5688245|gb|AI941260.1|AI941260
genomic: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAGgtattgtatt ... tttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCT
EST: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAG GTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCTEST: gi|298166087|gb|HO009058.1|HO009058
genomic: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAGgtattgtatt ... tttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCT
EST: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAG GTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCTEST: gi|192312357|gb|FK005361.1|FK005361
genomic: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAGgtattgtatt ... tttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCT
EST: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAG GTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCT
genomic: TGGGTGTTATTGACCATGACGTGGTTGAGCTGAATAATATGCATAGGCAGgtattgtatt ... tttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCT
tttgaattaacttcactatttttattaatttggacaagttggtgctttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCTGCTGCTTGTTGCTC
tattaat putative branch site (score: 2)
ctttatttc putative PPT
attaacttcactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatatgcgtcttgcttctgtgtttgtgttcgtttacagattttttgaattaacttcactatttttattaatttggacaagttggtgctttatttcagGTTATCCACACCGAAGCATATGTTGGTAAGCCAAAAGTGAAATCTGCCGCTGCTGCTTGTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - tgcttct
- - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg