1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttatgtagcagataagagtctgtggttcatctgaaacttgtagtttgtcgtttgaaatctagaaaataagtctctagtttgcatttggttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTTATTCCAAATGATCGTCTGCTTGACATAGCTGATGAGCAGATGCCTCTTC
species | Glycine max |
transcript | GLYMA14G02110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGTTACCTCTCCCTTCAGTTTTGAAGGACGTAAGAGATGCTTGCAG GCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTTEST: gi|208216065|gb|GE008973.1|GE008973
genomic: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATGCTTGCAGgcaggtgtcc ... ttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTT
EST: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATCCTTGCAG GCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTGEST: gi|24135378|gb|BU925879.1|BU925879
genomic: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATGCTTGCAGgcaggtgtcc ... ttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTT
EST: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATGCTTGCAG GCCTTTGAAGCCATCGAAAGGCTGCAGAAAAAT
genomic: GTGTTGTTACCTATCCCTTCAGTTTTGAAGGACGTAAGAGATGCTTGCAGgcaggtgtcc ... ttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAAT
tttgtcgtttgaaatctagaaaataagtctctagtttgcatttggttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTTATTCCAAATGATCGTCTGCTTGACATAGCTGATGAGCAGATGCCTCTTC
ttttcttc CT-rich tract
aaatctagaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatgtagcagataagagtctgtggttcatctgaaacttgtagtttgtcgtttgaaatctagaaaataagtctctagtttgcatttggttttcttcagGCCTTTGAAGCCATCGAAAGGCTGCAGAAAAATGTTGACACACTTATAGTTATTCCAAATGATCGTCTGCTTGACATAGCTGATGAGCAGATGCCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -tatgtag
- - - - - - - - -gagtctg
- - - - - - - - - - - - - - -catctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt