1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatttgaatttaacgtcaattcatttttcatatgctcacgtgttcaattagctttcttcttggttggtgccatatggagttatctgattctgtttgcagGCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACATTTAGAGGGGAAGTTTTCAACAGAAGAGGCAACGGTAGTTGTTAATCTTG
species | Glycine max |
transcript | GLYMA14G00540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCAA GCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACATEST: gi|298184099|gb|HO029312.1|HO029312
genomic: GAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCAAgtaactgcct ... ctgtttgcagGCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACAT
EST: GAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCAA GCACTTGATATGATACAGGGGATAAACAATATGCTCTTAATGGATTCACAT
genomic: GAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCAAgtaactgcct ... ctgtttgcagGCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACAT
caattagctttcttcttggttggtgccatatggagttatctgattctgtttgcagGCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACATTTAGAGGGGAAGTTTTCAACAGAAGAGGCAACGGTAGTTGTTAATCTTG
atctgat putative branch site (score: 4)
ttctgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttgaatttaacgtcaattcatttttcatatgctcacgtgttcaattagctttcttcttggttggtgccatatggagttatctgattctgtttgcagGCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACATTTAGAGGGGAAGTTTTCAACAGAAGAGGCAACGGTAGTTGTTAATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - -caattca
- - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - -cgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatatg