Sequence
atgc intronic sequence ATGC exonic sequencegtaagccgttcatttcttccttgtattatatgtatattaattaattaatataaacagaatttcaaaatctgactgtattgcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGC
Basic information
| species | Glycine max |
| transcript | GLYMA13G44740.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G44740.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G120579_T02 (Zea mays), 3'ss of exon 2
---------------------------------------------------gtaagccgttcatt-tcttccttgtattatatgtatattaattaattaatataaacagaatttcaaaatctg----actgtat-tgcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGC
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gtatgttattcacataaagttctcactgttgaccagatgacatttttttcctcgaacggagcatgatcttattaacatctcccatgtattag--acctacaagaaataaaatgacaaactatgctttatttcacatgcagATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTAAAGCTAGTGTCTGTCTCGATTCTACTGGCAAGCATATCAAGTTTGCTATAACTAGAGC
upper sequence: GLYMA13G44740.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G16880.2 (Arabidopsis thaliana), 3'ss of exon 3
----------------------------------gtaagccgttcatttcttccttgtatt---atatgtatattaattaatt----aatataaacagaatttcaaaatctgactg-------tattgcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGC
| ||| | ||| | ||| | | | | ||| || || | | | ||| |||||| || ||||||||||| | | ||||||||| ||||||| || ||||||||||| | || |||||||| ||||| |||||||| ||| |||| || | |||
gtaaggaaggataccttcttcttactcacttgttgctagctctgcataatcgaccaacattcacaaaagcttcttacttcctttcctgcttttttgactgcttcttgatctgatcaactttgcccttctagATGAATGCGCTCAAAAACTTGGGATTGAATGTCGTCAAGGCAAATGTTTACCTTGATTCTTCCGGCAAGCACAACAAATTTGCCATTACTAGAGC
upper sequence: GLYMA13G44740.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------------------------------------------------gtaagc-cgttcatttcttccttgtattatatgtatattaattaat-taatataaacagaatttcaaaatctgactgtatt---------gcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGC
|| || | || | | | || || | | | || | |||| | | || |||| || | || |||||||||||| | | ||| | ||||||||||||||||| |||||||| ||| |||||||||| || || ||||||| ||| ||||||| |||||
gtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5509224|gb|AI855782.1|AI855782EST: CTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACT ATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTT
genomic: CTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACTgtaagccgtt ... tgtattgcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtatattaattaattaatataaacagaatttcaaaatctgactgtattgcagATGAATGCGTTAAGAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTATTTCTGGATTCTTCTGGCAAACACAACAAGTTTTCCATCACAAAAGC
atattaattaattaat TA-rich tract
