1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagattcttaacagcaactgagcataaaaagtcattaccattgttgtgcattagtttgacaggcttttcatttttttcgtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCATATTTCAAGTGCTCTTTTGCTCCAAGCT
species | Glycine max |
transcript | GLYMA13G44730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTT ATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGEST: gi|5760480|gb|AI965843.1|AI965843
genomic: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTTgtaagattct ... gtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGG
EST: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTT ATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGEST: gi|5761174|gb|AI966537.1|AI966537
genomic: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTTgtaagattct ... gtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGG
EST: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTT ATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGEST: gi|5666936|gb|AI930972.1|AI930972
genomic: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTTgtaagattct ... gtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGG
EST: CTAAAA-TTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTT ATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGEST: gi|17400389|gb|BM177171.1|BM177171
genomic: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTTgtaagattct ... gtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGG
EST: TAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTT ATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGEST: gi|151403380|gb|EV273190.1|EV273190
genomic: TAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTTgtaagattct ... gtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGG
EST: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTT ATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGEST: gi|5820418|gb|AI988624.1|AI988624
genomic: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTTgtaagattct ... gtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGG
EST: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTT ATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGN
genomic: CTAAAATTTCAAGAGTTTATATGAGGACAGAAGCATCTGATAAAAGCCTTgtaagattct ... gtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGG
attaccattgttgtgcattagtttgacaggcttttcatttttttcgtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCATATTTCAAGTGCTCTTTTGCTCCAAGCT
gtttgac putative branch site (score: 4)
cttttcatttttttcg putative PPT
ttttcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcttaacagcaactgagcataaaaagtcattaccattgttgtgcattagtttgacaggcttttcatttttttcgtgtatccagATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCATATTTCAAGTGCTCTTTTGCTCCAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT