1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagtttattttctaccttatccttcatgaatggaaaatttgaagtcatgtatttctatatttttgtttctaaaattttaaaatatggaatctctttgcagGTGGAGTTCCTGCTCACAAAATTATGCGACACAAGTTCAATTGGGGAGTTAGATTTAAAA
species | Glycine max |
transcript | GLYMA13G44040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATTAGATCTTCAGGTCTGACAAGTGAGCTTATTCNTAATATTAATGAG GTGGAGTTCCTGCTCACAAAATTATGCGACACAAGTTCAATTGGGGAGTTAEST: gi|58016331|gb|CX703073.1|CX703073
genomic: AGATTAGATCTTCAGGTCTGACAAGTGAGCTTATTCCTAATATTAATGAGgttagtactt ... ctctttgcagGTGGAGTTCCTGCTCACAAAATTATGCGACACAAGTTCAATTGGGGAGTTA
EST: AGATTAGATCTTCAGGTCTGACAAGTGAGCTTATTCNTAATATTAATGAG GTGGAGTTCNTGCTCACAAAATTATGCGACACAAGTTCAATTGGGGAGTTA
genomic: AGATTAGATCTTCAGGTCTGACAAGTGAGCTTATTCCTAATATTAATGAGgttagtactt ... ctctttgcagGTGGAGTTCCTGCTCACAAAATTATGCGACACAAGTTCAATTGGGGAGTTA
catgtatttctatatttttgtttctaaaattttaaaatatggaatctctttgcagGTGGAGTTCCTGCTCACAAAATTATGCGACACAAGTTCAATTGGGGAGTTAGATTTAAAA
ttctaaa putative branch site (score: 2)
tctctttgc putative PPT
atttctatatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtttattttctaccttatccttcatgaatggaaaatttgaagtcatgtatttctatatttttgtttctaaaattttaaaatatggaatctctttgcagGTGGAGTTCCTGCTCACAAAATTATGCGACACAAGTTCAATTGGGGAGTTAGATTTAAAA
- - - - - -ctacctt
- - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - -catgtat