1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tactagaagtgcaggtgctgccaagtttaattattgacagaaaagtcaaatatactttttgtgatgtcctactgttctctcgtgtgttctttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGATCAGATATTGTTCTTAATATGCATCAG
species | Glycine max |
transcript | GLYMA13G44000.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|151403951|gb|EV273761.1|EV273761
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|208136320|gb|GD933246.1|GD933246
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AAAGCTTTCAG TAACTTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGEST: gi|58019023|gb|CX705765.1|CX705765
genomic: AAAGCTTTCAGgtatgttcat ... ttctctgcagTAAC-TGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTG
EST: AGAAACA-TTTGGAAGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|58018776|gb|CX705518.1|CX705518
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|193689192|gb|FK631403.1|FK631403
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|31462442|gb|CD404470.1|CD404470
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|208240966|gb|GE037780.1|GE037780
genomic: AGAAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: GGATCCTGAACTGAAAAATGCTGTAAAAGCTCTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGEST: gi|22541152|gb|BU090995.1|BU090995
genomic: GGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
EST: AAACATTTTGGAGGATCCTGAACTGAATAATGCTGTAAAAGCTTTCAG TAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
genomic: AAACATTTTGGAGGATCCTGAACTGAAAAATGCTGTAAAAGCTTTCAGgtatgttcat ... ttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGG
tcaaatatactttttgtgatgtcctactgttctctcgtgtgttctttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGATCAGATATTGTTCTTAATATGCATCAG
ttctctcgtgtgttct CT-rich tract
tatacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactagaagtgcaggtgctgccaagtttaattattgacagaaaagtcaaatatactttttgtgatgtcctactgttctctcgtgtgttctttctctgcagTAACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATCGGTGGATCAGATATTGTTCTTAATATGCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - -tgcaggt
- - - - - - - - -ctgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttc