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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcctcctctgctgctgttgttttgtttctgaattcaatttatgatgtgaagctaacatcataattgggaatatctgtagtttgtgaggatttagtcactaataccgatgtttgttgtacaactttactgttggcatcatttaattaattgcttgatgcaaacttgttaattcagGATTCTGGCGAGTTTATACTCTGGAACTGTCTGCATCTGGAACTACCAATCTCAG

Basic information

species Glycine max
transcript GLYMA13G43680.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 3
gtaatgcctcctctgctgctgttgttttgtttctgaattcaatttatgatgtgaagctaacatcataattgggaatatctgtagtttgtgaggatttagtcactaataccgatgtttgttgtacaactttactgttggcatcatttaattaattgcttgatgcaaacttgttaattcagGATTCTGGCGAGTTTATACTCTGGAACTGTCTGCATCTGGAACTACCAATCTCAG
                                                               | || ||   ||| | | || |     |   | || |   |||    |  |    ||| | ||    | || |    |   | || || |  ||   ||    ||||||  | ||||||| | || ||||| |||||||||||||| ||||||||||||||||| || |||
---------------------------------------------------------------cttattt---aatttatctaat-----accgtctattttttaac-ttggagcaaattgcagaa----agtggtaatttttctgaaata-tgactcattgt--gcttgtttctgcagGATTTTAGCAAGTTTGTACTCTGGAACTGTGTGCATCTGGAACTACCAGTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213613750|gb|DB961247.1|DB961247
EST:     CAAAGATCAGAGAGAGTGAAATGTGTGGATCTGCATCCAACAGAGCCATG                         GATTCTGGCGAGTTTATACTCTGGAACTGTCTGCATCTGGAACTACCAATC
genomic: CAAAGATCAGAGAGAGTGAAATGTGTGGATCTGCATCCAACAGAGCCATGgtaatgcctc ... gttaattcagGATTCTGGCGAGTTTATACTCTGGAACTGTCTGCATCTGGAACTACCAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttactgttggcatcatttaattaattgcttgatgcaaacttgttaattcagGATTCTGGCGAGTTTATACTCTGGAACTGTCTGCATCTGGAACTACCAATCTCAG
                                            tgttaat  putative branch site (score: 3)
               atcatttaattaatt  TA-rich tract