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...agatcactatcttaatagactcctgctcctgttttcataattaattttataggtcatagagtatttgacttcatttgattgttatatcatcttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAAT
species | Glycine max |
transcript | GLYMA13G42230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACEST: gi|193568120|gb|FK523855.1|FK523855
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
EST: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACEST: gi|208078310|gb|GD877970.1|GD877970
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
EST: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACEST: gi|14126377|gb|BG790815.1|BG790815
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
EST: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTG GAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
genomic: ATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGgtatgttctg ... cttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGAC
tttataggtcatagagtatttgacttcatttgattgttatatcatcttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAAT
tcatctt CT-rich tract
atttgattgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatcactatcttaatagactcctgctcctgttttcataattaattttataggtcatagagtatttgacttcatttgattgttatatcatcttgtcatagGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA