1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccaaagcagcattgtgcatcaacagtatccaattagttttccattttcagcagtgaattgatgatgcacaccttatatttcttccttatctatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTG
species | Glycine max |
transcript | GLYMA13G42180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAG AGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTAEST: gi|10842804|gb|BF066222.1|BF066222
genomic: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtattttaac ... tatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTA
EST: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAG AGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTAEST: gi|13312508|gb|BG406159.1|BG406159
genomic: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtattttaac ... tatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTA
EST: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAG AGAAATTGCGTGAATTTTCTTGGAGGGNGTGTTCCAGATTATATGCGTCCT
genomic: AAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGgtattttaac ... tatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGG-GTGTTCCAGATTATATGCGTCCT
ttcagcagtgaattgatgatgcacaccttatatttcttccttatctatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTG
aattgat putative branch site (score: 4)
ccttatatttcttcct putative PPT
ttatatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaagcagcattgtgcatcaacagtatccaattagttttccattttcagcagtgaattgatgatgcacaccttatatttcttccttatctatcctgtagAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-caaagca
- - - - - - - - catcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcac