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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttgcacttcagctgtcataaacaagtcatctaacagcaatgtttttctcttgtatcatcttctctcttgtgatgttagttctgaccagatgttccatcttctcattcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG

Basic information

species Glycine max
transcript GLYMA13G41580.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41580.5 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 3'ss of exon 3
gtaggttttgcacttcagctgtcataaacaagtcatctaacagcaatgtttttctcttgtatcatcttctctcttgtgatgttagttctgaccagatgttccatcttctcattcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG
||  | |||   |||   | ||  | |||      |  ||   ||   ||||  |    || |  | | |   || |||  | | ||             ||   |  |    |||| |||| ||||| || ||  | |||||||||||||| |   ||||||||||||||||||||||| | |||| ||| ||||||||    |  |||
gtgagctttcttctttgtcagtgtttaac------ttcaaatccatcattttgttaacataactccattttgattttgaaatcaattg------------cctattcattgaccatgcagTTCTTTGCGGGTGTCGTTTTCTTTGCTGTTGTGGTTGGTTTTATCCCAGAGCCAACACTTGCTCCCAGTTCAGATGTGAAAAATAAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323380|gb|FK017081.1|FK017081
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTT-GCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|298174471|gb|HO014616.1|HO014616
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|192300198|gb|FG989320.1|FG989320
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|213617692|gb|DB967222.1|DB967222
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|298198295|gb|HO039834.1|HO039834
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCAGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
EST: gi|298167335|gb|HO010774.1|HO010774
EST:     TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG                         TTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG
genomic: TGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGGgtaggttttg ... attcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctctcttgtgatgttagttctgaccagatgttccatcttctcattcatgtagTTTTTTGCTGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACACCCACTTCTGATGTGAAGGGCAGAAAG
                    ttctgac  putative branch site (score: 2)
                                 ttccatcttctcattc  putative PPT