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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctttattattctcctggagtctaaccagttatagtagttgttcttgtcgttgtgatcttcgctgttttcacaacttcattgtgtcgctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGTTGCCACTGAAACTATGTCCTTGCTGGAACTAAGTATATATGTAATTTGT

Basic information

species Glycine max
transcript GLYMA13G41410.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346594|gb|BM891474.1|BM891474
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|209716404|gb|BW657499.1|BW657499
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|213615147|gb|DB963359.1|DB963359
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|209704051|gb|BW673651.1|BW673651
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|16276001|gb|BI941626.1|BI941626
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|31465164|gb|CD407192.1|CD407192
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|298167118|gb|HO010557.1|HO010557
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGTCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|24205228|gb|BU964481.1|BU964481
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|192302178|gb|FG996600.1|FG996600
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|31456662|gb|CD398690.1|CD398690
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTCGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|7639957|gb|AW734268.1|AW734268
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|192323451|gb|FK017092.1|FK017092
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|11689971|gb|BF597647.1|BF597647
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|31467068|gb|CD409096.1|CD409096
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTTTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|21602717|gb|BQ613048.1|BQ613048
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|6914414|gb|AW395944.1|AW395944
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|151407442|gb|EV277257.1|EV277257
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|193477832|gb|FK440069.1|FK440069
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGCTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|209704052|gb|BW673652.1|BW673652
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|213603156|gb|DB981024.1|DB981024
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|208045873|gb|GD848163.1|GD848163
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|19270875|gb|BM887131.1|BM887131
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|120532901|gb|EH261034.1|EH261034
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTA-TTGGGCAT-CAAAGGGAAATCA
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCA
EST: gi|10252526|gb|BE820292.1|BE820292
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|151394522|gb|EV264393.1|EV264393
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|7639590|gb|AW733910.1|AW733910
EST:     ACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: ACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|21602076|gb|BQ612407.1|BQ612407
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCTGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|193592956|gb|FK548806.1|FK548806
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATCCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
EST: gi|298175559|gb|HO018270.1|HO018270
EST:     CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATA                         ATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT
genomic: CATACATAGCATTTTGACTTCCCCAAGGGTGATAGTTCTTCGGCCACATAgtaagccttt ... gctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcctttattattctcctggagtctaaccagttatagtagttgttcttgtcgttgtgatcttcgctgttttcacaacttcattgtgtcgctcatgcagATGGAACTATTGCCTAGTTGGGCATTCAAAGGGAAATCAGCGTATTAGTGTTGCCACTGAAACTATGTCCTTGCTGGAACTAAGTATATATGTAATTTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA