1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...accccccctaagggcaccttggaatcctattcaatagacatttcgtggtgtatgctattcttcattcctttctcacgaggtatggtttgtgttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
species | Glycine max |
transcript | GLYMA13G41110.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAATATCTCAAGTCATGATTTCGAGAAAACG TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGGEST: gi|208084810|gb|GD881064.1|GD881064
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: GGAATATCTCAAGTCATGATTTCGAGAAAAACG TTGAAGAAGATGTGCAAAGAAGGTGTATATTGGGEST: gi|208149896|gb|GD944218.1|GD944218
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAA-CGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
EST: GGAATATCTCAAGTCATGATTTCGAAGAAAACG TTGAAGAAGATGTGEST: gi|208257813|gb|GE055352.1|GE055352
genomic: GGAATATCTCAAGTCATGATTTCGA-GAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTG
EST: GGAATACCTCAAGTCATGATTTCGAGAAAACG TTGAAGAAGATGTGCAAAGAAGG
genomic: GGAATATCTCAAGTCATGATTTCGAGAAAACGgtaagttcgc ... gttgttgcagTTGAAGAAGATGTGCAAAGAAGG
tggtgtatgctattcttcattcctttctcacgaggtatggtttgtgttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
ttctcac putative branch site (score: 2)
tattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accccccctaagggcaccttggaatcctattcaatagacatttcgtggtgtatgctattcttcattcctttctcacgaggtatggtttgtgttgttgcagTTGAAGAAGATGTGCAAAGAAGGTGTATATTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-ccccccc
- - - - - - - caccttg
- - - - - - - - - - - - - ctattca
- - - - - - - - - - - - - - - - - - - - - - gtggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttg