1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...caattgaatattgcttttgcagaagcaactattttgcataagcctctttttcttgtattgatgccttgtttaccagtatttctttcattcttgataacagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAG
species | Glycine max |
transcript | GLYMA13G40960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAG TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACEST: gi|151404362|gb|EV274172.1|EV274172
genomic: CAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataacagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: CAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAG TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACEST: gi|213590294|gb|DB963857.1|DB963857
genomic: CAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataacagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
EST: CAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAG TCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
genomic: CAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAGgtgaagcatt ... ttgataacagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCAC
ctttttcttgtattgatgccttgtttaccagtatttctttcattcttgataacagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAG
tatttctttcattctt CT-rich tract
tatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattgaatattgcttttgcagaagcaactattttgcataagcctctttttcttgtattgatgccttgtttaccagtatttctttcattcttgataacagTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - gcttttg
- - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcattc