1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttttcctatctcgagtttctgaacgagatagatatttctggccatagagggttctcatttaacgtagctgaatgaatgaacttgctgtttttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGCGAAAATATGCAATTAAAGTGTAATGTTAGATCCCAATACGGATGATAA
species | Glycine max |
transcript | GLYMA13G40700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAGGGCGCTTAACTAAGCACCAG GCTTCATTGAAGATAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|151409720|gb|EV279528.1|EV279528
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|213595278|gb|DB964011.1|DB964011
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|298184397|gb|HO029610.1|HO029610
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|18848932|gb|BM568042.1|BM568042
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|192319942|gb|FK013312.1|FK013312
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAGGGCGCTTAACTAAGCACCAG GCTTCATTGAAGATAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|31463526|gb|CD405554.1|CD405554
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|208251633|gb|GE048782.1|GE048782
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|31458626|gb|CD400654.1|CD400654
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAG GCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGEST: gi|192321873|gb|FK013237.1|FK013237
genomic: TGCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
EST: GCGTCCCAAGAAGACCAGAGCCATCCGAGGGCGCTTAACTAAGCACCAG GCTTCATTGAAGATAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
genomic: GCGTCCCAAGAAGACCAGAGCCATCCGAAGGCGCTTAACTAAGCACCAGgtacttttca ... tttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTG
tagagggttctcatttaacgtagctgaatgaatgaacttgctgtttttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGCGAAAATATGCAATTAAAGTGTAATGTTAGATCCCAATACGGATGATAA
atttaac putative branch site (score: 3)
cttgctgtttttctt putative PPT
tttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcctatctcgagtttctgaacgagatagatatttctggccatagagggttctcatttaacgtagctgaatgaatgaacttgctgtttttcttacagGCTTCATTGAAGACAGAGCGTGAGAAGAAGAAGGAATTGTATTTTCCACTGCGAAAATATGCAATTAAAGTGTAATGTTAGATCCCAATACGGATGATAA
- - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - ctggcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt