1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtttaatttctcattcttaatctttgtttccctttgccaggttttttccttccttgtagacttgatgtattttcactctgtctctgcagATGGAAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTTGA
species | Glycine max |
transcript | GLYMA13G40130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAGCATTGATCCTCATTAAGAAAGAGGAGGAAAAACTTAACCACTTTG ATGGAAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGCEST: gi|13479343|gb|BG508686.1|BG508686
genomic: TCCAGCATTGATCCTCATTAAGAAAGAGGAGGAAAAACTTAACCACTTTGgtttgtttaa ... gtctctgcagATGGAAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGC
EST: TCCAGCATTGATCCTCATTAAGAAAGAGGAGGAAAAACTTAACCACTTTG ATGGAAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGC
genomic: TCCAGCATTGATCCTCATTAAGAAAGAGGAGGAAAAACTTAACCACTTTGgtttgtttaa ... gtctctgcagATGGAAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGC
tgccaggttttttccttccttgtagacttgatgtattttcactctgtctctgcagATGGAAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTTGA
acttgat putative branch site (score: 5)
ttttcactctgtctct putative PPT
atgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttaatttctcattcttaatctttgtttccctttgccaggttttttccttccttgtagacttgatgtattttcactctgtctctgcagATGGAAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA