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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgtcctctctcttttccaattcaatctttttatactgttgaaatgagttattatgatttttgcttatggatttagtcatattgatgtattgaaaacagGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTG

Basic information

species Glycine max
transcript GLYMA13G39650.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39650.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0061g00720.t01 (Vitis vinifera), 3'ss of exon 3
gtaagctgtcctctctcttttccaattcaatctttttat--actgttgaaatgagttattatgatttttgcttatgg-atttagtcatatt------gatgtattgaaaa--cagGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTT-TCCTG
||||||| ||  ||  |  || || |||| | |  | ||  |   |    || | |  | ||  | ||  ||| ||| | ||||   || |       ||||    ||||  ||||| | || |  |||  ||   || ||| |||||||||||||||||||| | ||||| |||||||||||||| || ||||| |||    ||  |   |||| 
gtaagct-tctccttccactttcacttcattgtcatcattcatcatcatcatca-tcttgatcctcttctcttctggtacttagcattaatccatcaaatgtcacaaaaatgcagGTTAGAGAATGTGATGAAAGCATGAACTTGCCAAATTTGAAGCTATGGTTAACTGGGGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACTTCCATCCT-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttattatgatttttgcttatggatttagtcatattgatgtattgaaaacagGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTG
                                   tattgat  putative branch site (score: 3)
     tattatgattttt  TA-rich tract