1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catctagtaagatgctctgttttaaagttttgttattttctgggttttaaatttcaatgttgctttagctgatttatgattgatttggttgactttgcagGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTCAAGTTCCAGCTTAAGAAGGTTCTCTGCAT
species | Glycine max |
transcript | GLYMA13G39270.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|213592002|gb|DB975208.1|DB975208
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|192308674|gb|FG999741.1|FG999741
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: TTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|213588132|gb|DB979210.1|DB979210
genomic: TTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
tttaaatttcaatgttgctttagctgatttatgattgatttggttgactttgcagGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTCAAGTTCCAGCTTAAGAAGGTTCTCTGCAT
ggttgac putative branch site (score: 4)
atttatgattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctagtaagatgctctgttttaaagttttgttattttctgggttttaaatttcaatgttgctttagctgatttatgattgatttggttgactttgcagGGAAGTTCCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTCAAGTTCCAGCTTAAGAAGGTTCTCTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG